| Publications |
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Zeng
C, Kouprina N, Zhu B, Cairo A, Hoek M, Cross G, Osoegawa K,
Larionov V, de Jong P. Large-insert BAC/YAC libraries for
selective re-isolation of genomic regions by homologous recombination
in yeast. Genomics. 2001 Sep;77(1/2):27-34.
International
Human Genome Sequencing Consortium. Initial sequencing and
analysis of the human genome. Nature 409: 860-921 (2001).
[published correction appears in Nature 412: 565-566 (2001)]
Weichenhan
D, Kunze B, Winking H, van Geel M, Osoegawa K, de Jong PJ,
Traut W. Source and component genes of a 6-200 Mb gene cluster
in the house mouse.
Mamm Genome. 2001 Aug;12(8):590-4.
Fahrenkrug
SC, Rohrer GA, Freking BA, Smith TP, Osoegawa K, Shu CL, Catanese
JJ, de Jong PJ.
A porcine BAC library with tenfold genome coverage: a resource
for physical and genetic map integration. Mamm Genome. 2001
Jun;12(6):472-4.
Cheung
VG, Nowak N, Jang W, Kirsch IR, Zhao S, Chen XN, Furey TS,
Kim UJ, Kuo WL, Olivier M, Conroy J, Kasprzyk A, Massa H,
Yonescu R, Sait S, Thoreen C, Snijders A, Lemyre E, Bailey
JA, Bruzel A, Burrill WD, Clegg SM, Collins S, Dhami P, Friedman
C, Han CS, Herrick S, Lee J, Ligon AH, Lowry S, Morley M,
Narasimhan S, Osoegawa K, Peng Z, Plajzer-Frick I, Quade BJ,
Scott D, Sirotkin K, Thorpe AA, Gray JW, Hudson J, Pinkel
D, Ried T, Rowen L, Shen-Ong GL, Strausberg RL, Birney E,
Callen DF, Cheng JF, Cox DR, Doggett NA, Carter NP, Eichler
EE, Haussler D, Korenberg JR, Morton CC, Albertson D, Schuler
G, de Jong PJ, Trask BJ. (2001) Integration of cytogenetic
landmarks into the draft sequence of the human genome. The
BAC Resource Consortium. Nature. 2001 Feb 15;409(6822):953-8.
McPherson
JD, Marra M, Hillier L, Waterston RH, Chinwalla A, Wallis
J, Sekhon M, Wylie K, Mardis ER, Wilson RK, Fulton R, Kucaba
TA, Wagner-McPherson C, Barbazuk WB, Gregory SG, Humphray
SJ, French L, Evans RS, Bethel G, Whittaker A, Holden JL,
McCann OT, Dunham A, Soderlund C, Scott CE, Bentley DR, Schuler
G, Chen HC, Jang W, Green ED, Idol JR, Maduro VV, Montgomery
KT, Lee E, Miller A, Emerling S, Kucherlapati, Gibbs R, Scherer
S, Gorrell JH, Sodergren E, Clerc-Blankenburg K, Tabor P,
Naylor S, Garcia D, de Jong PJ, Catanese JJ, Nowak N, Osoegawa
K, Qin S, Rowen L, Madan A, Dors M, Hood L, Trask B, Friedman
C, Massa H, Cheung VG, Kirsch IR, Reid T, Yonescu R, Weissenbach
J, Bruls T, Heilig R, Branscomb E, Olsen A, Doggett N, Cheng
JF, Hawkins T, Myers RM, Shang J, Ramirez L, Schmutz J, Velasquez
O, Dixon K, Stone NE, Cox DR, Haussler D, Kent WJ, Furey T,
Rogic S, Kennedy S, Jones S, Rosenthal A, Wen G, Schilhabel
M, Gloeckner G, Nyakatura G, Siebert R, Schlegelberger B,
Korenberg J, Chen XN, Fujiyama A, Hattori M, Toyoda A, Yada
T, Park HS, Sakaki Y, Shimizu N, Asakawa S, Kawasaki K, Sasaki
T, Shintani A, Shimizu A, Shibuya K, Kudoh J, Minoshima S,
Ramser J, Seranski P, Hoff C, Poustka A, Reinhardt R, Lehrach
H. A physical map of the human genome. The International Human
Genome Mapping Consortium. Nature. 2001 Feb 15;409(6822):934-41.
Osoegawa,
K., Mammoser, A. G., Wu, C., Frengen, E., Zeng, C., Catanese,
J. J., de Jong, P. J. (2001) A Bacterial Artificial Chromosome
Library for Sequencing the Complete Human Genome, Genome Research,
Vol. 11, Issue 3, 483-496, March 2001.
Eirik
Frengen, Baohui Zhao, Steve Howe, Dieter Weichenhan, Kazutoyo
Osoegawa, Elisabet Gjernes, Joel Jessee, Hanz Prydz, Clare
Huxley, and Pieter J. de Jong (2000) Modular Bacterial Artificial
Chromosome Vectors for Transfer of Large Inserts into Mammalian
Cells. Genomics 58:118-126.
Osoegawa,
K., Tateno, M., Woon, P.-Y., Frengen, E. Mammoser A. G., Catanese,
J. J., Hayashizaki, Y., and de Jong, P. J. (2000) Bacterial
Artificial Chromosome Libraries for Mouse Sequencing and Functional
Analysis. Genome Research 10: 116-128.
Frengen,
E., Weichenhan, D., Zhao, B., Osoegawa, K., van Geel, M.,
and de Jong, P.J. (1999) A Modular, Positive Selection Bacterial
Artificial Chromosome Vector with Multiple Cloning Sites.
Genomics 58: 250-253.
Hoskins,
R., Nelson, C.R., Berman, B.P., Laverty, T.R., George, R.A.,
Ciesiolka, L., Naeemuddin, M., Arenson, A.D., Durbin, J.,
David, R.G., Tabor, P.E., Bailey, M.R., DeShazo, D.R., Catanese,
J., Mammoser, A., Osoegawa, K., de Jong, P.J., Celniker, S.E.,
Gibbs, R.A., Rubin, G.M., and Scherer, St. E. (2000) A BAC-based
physical map of the major autosomes of Drosophila melanogaster.
Science. 2000 Mar 24;287(5461):2271-4.
Osoegawa,
K., Woon, P.Y., Zhao, B., Frengen, E., Tateno, M., Catanese,
J.J. and de Jong, P.J. (1998) An improved approach for construction
of bacterial artificial chromosome libraries. Genomics 51:1-8.
Liu, J., Aoki, M., Illa, I., Wu, C., Fardeau, M., Angelini,
C., Serrano, C., Urtizberea, J.A., Hentati, F., Hamida, M.B.,
Bohlega, Sa., Culper, E.J., Amato, A.A., Bossie, K., Oeltjen,
J., Bejaoui, K., McKenna-Yasek, D., Hosler, B.A., Schurr,
E., Arahata, K., de Jong, P.J. and Brown, R.H. 1998. Dysferlin,
a novel skeletal muscle gene, is mutated in Miyoshi myopathy
and limb girdle muscular dystrophy. Nature Genet. 20:31-36.
Woon,
P.Y., Osoegawa, K., Kaisaki, P.J., Zhao, B.H., Catanese, J.J.,
Gauguier, D., Cox, R., Levy, E.R., Lathrop, G.M., Monaco,
A.P. and de Jong, P.J. 1998. Construction and characterization
of a 10-fold genome equivalent rat P1 derived artificial chromosome
library. Genomics 50(3):306-316.
Liu, J., Wu, C., Bossie, K., Bejaoui, K., Hosler, B.A., Gingrich,
J.C., Ben Hamida, M., Hentati, F., Schurr, E., de Jong, P.J.
and Brown, R.H. Jr. (1998) Generation of a 3-Mb PAC contig
spanning the Miyoshi myopathy/limb-girdle muscular dystrophy
(MM/LGMD2B) locus on chromosome 2p13. Genomics. 49(1):23-29.
Higgins, M.J., Day, C.D., Smilinich, N.J., Ni, L., Cooper,
P.R., Nowak, N.J., Davies, C., de Jong, P.J., Hejtmancik,
F., Evans, G.A., Smith, R.J. and Shows, T.B. (1998) Contig
maps and genomic sequencing identify candidate genes in the
usher 1C locus. Genome Res. 8(1):57-68.
Reid, L.H., Davies, C., Cooper, P.R., Crider-Miller, S.J.,
Sait, S.N.J., Nowak, N.J., Evans, G., Stanbridge, E.J., de
Jong, P., Shows, T.B., Weissman, B.E. and Higgins, N.J. (1997)
A 1-Mb physical map and PAC contig of the imprinted domain
in 11p15.5 that contains the TAPA1 and the BWSCR1/WT2 region.
Genomics 43:366-375.
Cooper, P.R., Nowak, N.J., Higgins, M.J., Simpson, S.A.,
Marquardt, A., Stoehr, H., Weber, B.H., Gerhard, D.S., de
Jong, P.J. and Shows, T.B. (1997) A sequence-ready high-resolution
physical map of the best macular dystrophy gene region in
11q12-q13. Genomics 41(2):185-192
Hubert, R.S., Mitchell, S., Chen, X.N., Ekmekji, K., Gadomski,
C., Sun, Z., Noya, D., Kim, U.J., Chen, C., Shizuya, H., Simon,
M., de Jong, P.J. and Korenberg, J.R. (1997) BAC and PAC contigs
covering 3.5 Mb of the Down syndrome congenital heart disease
region between D21S55 and MX1 on chromosome 21. Genomics 41(2):218-226.
Guru, S.C., Olufemi, S.E., Manickam, P., Cummings, C., Gieser,
L.M., Pike, B.L., Bittner, M,L., Jiang, Y., Chinault, A.C.,
Nowak, N.J., Brzozowska, A., Crabtree, J.S., Wang, Y., Roe,
B.A., Weisemann, J.M., Boguski, M.S., Agarwal, S.K., Burns,
A.L., Spiegel, A.M., Marx, S.J., Flejter, W.L., de Jong, P.J.,
Collins, F.S. and Chandrasekharappa, S.C. (1997) A 2.8-Mb
clone contig of the multiple endocrine neoplasia type 1 (MEN1)
region at 11q13. Genomics 42(3):436-445.
Rogaev, E.I., Sherrington, R., Wu, C., Levesque, G., Liang,
Y., Rogaeva, E.A., Ikeda, M., Holman, K., Lin, C., Lukiw,
W.J., de Jong, P.J., Fraser, P.E., Rommens, J.M. and St. George-Hyslop,
P. (1997) Analysis of the 5' sequence, genomic structure,
and alternative splicing of the presenilin-1 gene (PSEN1)
associated with early onset Alzheimer disease. Genomics 40(3):415-424.
Frengen, E., Thomsen, P.D., Brede, G., Solheim, J., de Jong,
P.J. and Prydz, H. (1997) The gene cluster containing the
LCAT gene is conserved between human and pig. Cytogenet. Cell
Genet. 76(1-2):53-57.
Nechiporuk, T., Nechiporuk, A., Sahba, S., Figueroa, K.,
Shibata, H., Chen, X.-N., Korenberg, J.R., de Jong, P.J. &
Pulst, S.M. (1997). A high-resolution PAC and BAC map of the
Sca2 region. Genomics 44, 321-329.
Ranta, S., Lehesjoki, A.E., de Fatima Bonaldo, M., Knowles,
J.A., Hirvasniemi, A., Ross, B., de Jong, P.J., Soares, M.B.,
de la Chapelle, A. and Gilliam, T.C. (1997) High-resolution
mapping and transcript identification at the progressive epilepsy
with mentalretardation locus on chromosome 8p. Genome Res.
7(9):887-896.
Frengen, E., Wu, C. and de Jong, P.J. (1997) Transfer of
small YACs to E. coli as large circular plasmids. Genetic
Analysis 14(2):55-59.
Osoegawa, K., de Jong P,J., Frengen, E. and Ioannou, P.A.
1999. In Current protocols in human genetics (eds. N.C. Dracopoli,
et al.), pp. 5.15.1-5.15.33. Wiley, New York.
Wu, C., Zhu, S., Simpson, S. and de Jong, P.J. (1996) DOP-vector
PCR: A method for rapid isolation and sequencing of insert
termini from PAC clones. Nucleic Acids Research 24,2614-2616.
Osoegawa, K, Susukida, R., Okana, S., Kudoh, J., Minoshima,
S., Shimizu, H., de Jong, P.J., Groet, J., Ives, J., Lehrach,
H., Nizetic. D. and Soeda, E. (1996) An integrated map with
cosmid/PAC contigs of a 4-Mb Down Syndrome critical region.
Genomics 32,375-387.
Roy, N., Mahadevan, M.S., McLean, M., Shutler, G., Yaraghi,
Z., Farahani, R., Baird, S., Besner-Johnston, A., Lefebvre,
C., Kang, X., Salih, M., Aubry, H., Tamai, K., Guan, X., Ioannou,
P, Crawford, T.O., de Jong, P.J., Surh, L., Ikeda, J.-E.,
Korneluk, R.G. and MacKenzie, A. (1995) The gene for Neuronal
Apoptosis Inhibitory Protein is partially deleted in individuals
with Spinal Muscular Atrophy. Cell,167-178.
Soeda, E., Hou, D.-X., Osoegawa, K., Atsuchi, Y., Yamagata,
T., Shimokawa, T., Kishida, H., Soeda, E., Okano, S., Chumakov,
I., Cohen, D., Raff, M., Gardiner, K., Graw, S.L., Patterson,
D., de Jong, P., Ashworth, L.K., Slezak, T., and Carrano,
A.V. (1995) Cosmid assembly and anchoring to human chromosome
21.Genomics 25,73-84.
Ioannou,
P. Amemiya, C.T., Garnes, J., Kroisel, P.M., Shizuya, H.,
Chen, C., Batzer, M.A. and de Jong, P.J. (1994) A new bacteriophage
P1-derived vector for the propagation of large human DNA fragments.
Nature Genetics 6:84-89.
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